Workflowr page from the catchSalmon/catchKallisto paper

Last updated: 2023-06-05

Checks: 2 0

Knit directory: TranscriptDE-code/analysis/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

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Repository version: daad6b7

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Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	0173696	Pedro Baldoni	2023-05-22	Build site.
html	190b7e4	Pedro Baldoni	2023-05-21	Build site.
html	bfd4304	Pedro Baldoni	2023-05-21	Build site.
html	3673f28	Pedro Baldoni	2023-05-19	Build site.
html	f01c7b4	Pedro Baldoni	2023-02-23	Build site.
Rmd	04f8afa	Pedro Baldoni	2023-02-23	Fix typo and changing repo name
html	ac417e8	Pedro Baldoni	2023-02-23	Build site.
Rmd	b54a157	Pedro Baldoni	2023-02-23	Expanding index
html	b54a157	Pedro Baldoni	2023-02-23	Expanding index
html	2f1373b	Pedro Baldoni	2023-02-17	Build site.
Rmd	5a5a703	Pedro Baldoni	2023-02-17	Change title
html	38286e3	Pedro Baldoni	2023-02-17	Build site.
html	b8e3979	Pedro Baldoni	2023-02-17	Build site.
Rmd	9b96d31	Pedro Baldoni	2023-02-17	Cleanup main page
Rmd	57b0d00	Pedro Baldoni	2023-02-17	Renaming repo and organizing main page
html	57b0d00	Pedro Baldoni	2023-02-17	Renaming repo and organizing main page
Rmd	ca7c822	Pedro Baldoni	2023-01-06	Adjusting index page
html	ca7c822	Pedro Baldoni	2023-01-06	Adjusting index page
html	363e980	Pedro Baldoni	2022-11-15	Build site.
Rmd	f4ae2f9	Pedro Baldoni	2022-11-15	Start workflowr project.

This website hosts the code for the transcript-level differential expression paper, which presents the methodology implemented in the functions catchSalmon and catchKallisto from the R/Bioconductor package edgeR.

Workflowr page from the catchSalmon/catchKallisto paper

Simulation study

Case study